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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1207196_1207323_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1207196 - 1207323
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTCCACCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TGCATTTCCACC
Flanking Amino Acid:
VLVDGGVLTHVKQEWHFQDK
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
72.3
0.5
0.8
65.9
29.8
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
43.2
-0.5
1.9
51.13
40.1

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045002
1201246 - 1211854
10609
ENSAPLT00000036617
1201246 - 1211854
10609
ENSAPLT00000031885
1205144 - 1211854
6711
ENSAPLT00000007459
1206521 - 1211872
5352