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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1207833_1208000_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1207833 - 1208000
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCTTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAG
U12 Branch Point Sequence:
TTGGCCCTAAGG
Flanking Amino Acid:
IKAVAHLSNSVKRELAAVLM
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
48.3
-0.1
1.5
55.2
38.9
Major PPT
73.6
0.53
0.8
68.2
32
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
48.6
-0.2
2.1
59.63
47.9

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036617
1201246 - 1211854
10609
ENSAPLT00000031885
1205144 - 1211854
6711
ENSAPLT00000007459
1206521 - 1211872
5352
ENSAPLT00000045002
1201246 - 1211854
10609