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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1208062_1208261_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1208062 - 1208261
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
TCTCCCCAGAGA
Flanking Amino Acid:
FESHQRAGTVLFSQGDKGTS
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
65.8
40.2
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
86.1
0.81
0.6
81.7
23.1
Minor 5ss
32.5
-2
2.6
33.8
33.9
Minor BPS
42.8
-0.5
2.2
56.48
42.8

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045002
1201246 - 1211854
10609
ENSAPLT00000036617
1201246 - 1211854
10609
ENSAPLT00000031885
1205144 - 1211854
6711
ENSAPLT00000007459
1206521 - 1211872
5352