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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1208339_1208471_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1208339 - 1208471
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TGTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACCCCATCC
Flanking Amino Acid:
GSVNVVTHGKGLVATLHEGD
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.8
0.51
0.8
66.2
30
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
44.9
-0.4
2.1
60.35
44.4

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031885
1205144 - 1211854
6711
ENSAPLT00000007459
1206521 - 1211872
5352
ENSAPLT00000045002
1201246 - 1211854
10609
ENSAPLT00000036617
1201246 - 1211854
10609