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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1208619_1208809_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1208619 - 1208809

Intron Length:

191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGCAGG

5'SS Class:

major

3'SS Sequence:

CTTCCCCCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAAAAT

U12 Branch Point Sequence:

TTTCCCTTGGCC

Flanking Amino Acid:

DKQDFNHILKDVEANTMRLK

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.1

59.7

46.7

Major BPS

48.3

-0.1

1.2

53.2

37.3

Major PPT

0.58

0.7

70.2

23.7

Minor 5ss

31.9

-2.1

3.1

39.2

46.3

Minor BPS

49.3

-0

3.5

79.6

35.7

Associated Gene:

Gene:

RAPGEF3

Ensembl Gene ID:

ENSAPLG00000007186

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045002

1201246 - 1211854

10609

ENSAPLT00000036617

1201246 - 1211854

10609

ENSAPLT00000031885

1205144 - 1211854

6711

ENSAPLT00000007459

1206521 - 1211872

5352