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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1209771_1210030_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

1209771 - 1210030

Intron Length:

260

Sequence Information:

Terminal Dinucleotides:

AT-AG

5'SS Sequence:

CCA|ATATCCTTC

5'SS Class:

strong_minor

3'SS Sequence:

TAACTGGTCCCAG|T

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

CCTTAAC

U12 Branch Point Sequence:

GTGCCCTTAACT

Flanking Amino Acid:

TSQLCRALLHHFRAEPLEGS

Intron Amino Acid Position:

387

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

30.5

-1.2

3.3

41.7

40.5

Major BPS

64.7

0.37

1.1

67.2

35.2

Major PPT

63.7

0.31

53.8

45.3

Minor 5ss

91.9

1.4

0.9

87.7

23.4

Minor BPS

79.7

1.01

1.2

86.68

38.7

Associated Gene:

Gene:

RAPGEF3

Ensembl Gene ID:

ENSAPLG00000007186

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045002

1201246 - 1211854

10609

ENSAPLT00000036617

1201246 - 1211854

10609

ENSAPLT00000031885

1205144 - 1211854

6711