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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1210182_1210262_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1210182 - 1210262
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTGCCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CGGCGCTGACCC
Flanking Amino Acid:
GDRSTTALLQNLADLASRDP
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
74.3
0.55
0.8
66
35.9
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
40.6
-0.7
2
45.13
43

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045002
1201246 - 1211854
10609
ENSAPLT00000036617
1201246 - 1211854
10609
ENSAPLT00000031885
1205144 - 1211854
6711
ENSAPLT00000007459
1206521 - 1211872
5352