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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1210340_1210477_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1210340 - 1210477
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGGGTTTTAACA
Flanking Amino Acid:
VQEQERRRTRVLENGDGSVS
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
70.5
36.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
39.4
-1.2
2.9
51.5
44.9
Minor BPS
57.2
0.22
1.4
59.84
40.4

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045002
1201246 - 1211854
10609
ENSAPLT00000036617
1201246 - 1211854
10609
ENSAPLT00000031885
1205144 - 1211854
6711