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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_1210915_1211011_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1210915 - 1211011
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGATCAT
U12 Branch Point Sequence:
AGCTGCGGGATC
Flanking Amino Acid:
HLLVKVNSAGDKVGLQLDAV
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
55.3
0.13
1.4
59.7
46.7
Major PPT
75.9
0.58
0.8
69.5
31.2
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
37.7
-0.9
2.3
44.69
37.9

Associated Gene:

Gene:
RAPGEF3
Ensembl Gene ID:
ENSAPLG00000007186
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036617
1201246 - 1211854
10609
ENSAPLT00000031885
1205144 - 1211854
6711
ENSAPLT00000007459
1206521 - 1211872
5352
ENSAPLT00000045002
1201246 - 1211854
10609