Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_121399_121785_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

121399 - 121785

Intron Length:

387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

GTCATGGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TCCATCTCCATT

Flanking Amino Acid:

AENDFMLLKKDADAAYMSKV

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.4

38.2

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

0.4

1.1

57.2

47.4

Minor 5ss

25.6

-2.8

30.5

42.8

Minor BPS

44.8

-0.3

1.9

59.71

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025066

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027058

117839 - 124305

6467