Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_122223_122574_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

122223 - 122574

Intron Length:

352

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGATG

5'SS Class:

strong_major

3'SS Sequence:

CTGCCCTTCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

GGTGTCTCACGT

Flanking Amino Acid:

AEAESWYQSKYEELQLTAGQ

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

78.6

37.3

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

75.2

0.57

0.8

72.5

32.2

Minor 5ss

30.4

-2.2

3.2

38.7

46.6

Minor BPS

41.9

-0.5

56.88

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025066

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027058

117839 - 124305

6467