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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_144257_144795_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144257 - 144795
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
CTCTGTGCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCACACTGACGT
Flanking Amino Acid:
AGDGVGSVNISVVSSSGGGG
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
64.4
38.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
71.5
0.48
0.9
68.5
37.3
Minor 5ss
37
-1.5
2.9
50
46.3
Minor BPS
38.7
-0.7
1.9
49.09
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000589
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031476
143079 - 153529
10451
ENSAPLT00000004731
144072 - 174462
30391
ENSAPLT00000001244
143079 - 169608
26530