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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_146861_147003_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146861 - 147003
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTCCAT
U12 Branch Point Sequence:
TTTTGTGTCACA
Flanking Amino Acid:
AEAESWYQSKYEALQVTAGK
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
55.9
0.15
1.3
66.4
39.9
Major PPT
81.2
0.7
0.9
75.8
38.1
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
45.6
-0.3
2.7
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000589
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031476
143079 - 153529
10451
ENSAPLT00000004731
144072 - 174462
30391
ENSAPLT00000001244
143079 - 169608
26530