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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_150973_151743_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150973 - 151743
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTGCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GCTTTTACAAAT
Flanking Amino Acid:
NNRFASFIDKVRFLEQQNKM
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
77.8
0.63
0.9
73.4
41.9
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
45.5
-0.2
1.8
62.71
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000589
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031476
143079 - 153529
10451
ENSAPLT00000004731
144072 - 174462
30391
ENSAPLT00000001244
143079 - 169608
26530