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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_166109_169599_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
166109 - 169599
Intron Length:
3491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AGGCTCTGAAAT
Flanking Amino Acid:
NNQFVTLIEKVQCLEQQNKI
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
77
0.61
1
74
36.1
Minor 5ss
30.1
-2.3
3.2
38.9
46.2
Minor BPS
49.3
0.03
1.5
62.99
40.4

Associated Gene:

Gene:
KRT80
Ensembl Gene ID:
ENSAPLG00000015884
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016565
165765 - 180115
14351