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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_169815_175030_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
169815 - 175030
Intron Length:
5216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
CCACTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTCTGACAACT
Flanking Amino Acid:
VLSTMDNFRSKYEDEIRLCS
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
80.8
33.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.1
0.5
0.8
69.5
30.9
Minor 5ss
39.6
-1.2
3.1
50.6
40.3
Minor BPS
45.5
-0.2
2.4
74.5
42

Associated Gene:

Gene:
KRT80
Ensembl Gene ID:
ENSAPLG00000015884
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016565
165765 - 180115
14351