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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_179430_179766_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179430 - 179766
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTATGCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATGC
Flanking Amino Acid:
YRKLVEGEESSMESPIPTVI
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
72.2
0.5
0.9
65
36.3
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
55.3
0.15
2
65.52
46.3

Associated Gene:

Gene:
KRT80
Ensembl Gene ID:
ENSAPLG00000015884
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016565
165765 - 180115
14351