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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_179823_179909_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
179823 - 179909
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTCCCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CACTTCTAAGCT
Flanking Amino Acid:
ISAVHSRPKHPVSASTLRNS
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.3
67.4
44
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.2
0.68
0.7
72.6
32.1
Minor 5ss
36.3
-1.6
3.3
53.8
43.7
Minor BPS
48.3
-0
1.9
64.02
46.5

Associated Gene:

Gene:
KRT80
Ensembl Gene ID:
ENSAPLG00000015884
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016565
165765 - 180115
14351