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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_208338_209445_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
208338 - 209445
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
ALLGAIIFTMFLAFDTQMLM
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
FAIM2
Ensembl Gene ID:
ENSAPLG00000015532
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016211
206633 - 222994
16362