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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_209500_211355_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
209500 - 211355
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TACTCCTGCAGG
Flanking Amino Acid:
ILAVILPYQYVPWLHAIYAL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.5
32.9
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
84.5
0.78
0.7
77.9
36.6
Minor 5ss
32
-2.1
2.7
35.9
33.5
Minor BPS
45.3
-0.5
2.2
53.11
47.3

Associated Gene:

Gene:
FAIM2
Ensembl Gene ID:
ENSAPLG00000015532
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016211
206633 - 222994
16362