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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_211452_211980_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
211452 - 211980
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTGCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GCCCTTGTAACG
Flanking Amino Acid:
SVTIFSFQTKFDFTSYQGVL
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.5
0.75
0.8
77.6
31.1
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
44
-0.5
2
44.12
42.3

Associated Gene:

Gene:
FAIM2
Ensembl Gene ID:
ENSAPLG00000015532
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016211
206633 - 222994
16362