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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_214652_217002_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
214652 - 217002
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCATCCCTAATC
Flanking Amino Acid:
QTHSAWYWASYAVFFVTYLI
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
0.9
76.8
31.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
36.7
-1.5
2.9
47.4
36.1
Minor BPS
65
0.45
1.7
71.97
39.3

Associated Gene:

Gene:
FAIM2
Ensembl Gene ID:
ENSAPLG00000015532
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016211
206633 - 222994
16362