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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_217057_217767_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
217057 - 217767
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTGCTCAGTG
Flanking Amino Acid:
TLVIVAFFTFCEPVKGYIQT
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.9
0.81
0.8
80.6
31.5
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
42.5
-0.7
2.1
46.83
46.7

Associated Gene:

Gene:
FAIM2
Ensembl Gene ID:
ENSAPLG00000015532
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016211
206633 - 222994
16362