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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_220040_221613_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
220040 - 221613
Intron Length:
1574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
MTQGKLSVNNKPPNP
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78
0.63
0.9
73
36.9
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
FAIM2
Ensembl Gene ID:
ENSAPLG00000015532
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016211
206633 - 222994
16362