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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_233324_233786_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
233324 - 233786
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCTCTTTTCACC
Flanking Amino Acid:
VIVGDFSDHWVFWVGPLIGA
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
79.3
0.66
0.8
73.7
35.6
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
55.2
0.15
1.7
66.58
39.6

Associated Gene:

Gene:
AQP2
Ensembl Gene ID:
ENSAPLG00000015514
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016165
230622 - 234574
3953