Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_243837_244371_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

243837 - 244371

Intron Length:

535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCATC

5'SS Class:

major

3'SS Sequence:

TGTTGCTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CTCCTCTCACCC

Flanking Amino Acid:

IVRRFSSAHWVFWVGPILGA

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

72.2

39.5

Major BPS

72.7

0.56

30.1

Major PPT

78.3

0.64

0.9

41.4

Minor 5ss

38.1

-1.3

43.8

Minor BPS

46.4

-0.2

1.8

55.1

43.3

Associated Gene:

Gene:

AQP5

Ensembl Gene ID:

ENSAPLG00000015507

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016156

241524 - 245000

3477