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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_260778_261620_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
260778 - 261620
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGGG
5'SS Class:
major
3'SS Sequence:
CCCTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCTTTTTTAAAG
Flanking Amino Acid:
VHWLINTKRYRYN*
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
52.4
41.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.7
0.58
1
76.9
29.3
Minor 5ss
26.6
-2.7
3.7
37.3
47.4
Minor BPS
59.4
0.16
1.5
59.29
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019104
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040331
259973 - 261630
1658