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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_267791_268616_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
267791 - 268616
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTAGAATT
Flanking Amino Acid:
CSVFLTTVLKFIPMPVLYGV
Intron Amino Acid Position:
909

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
52.5
0.16
1.7
74.16
36.7

Associated Gene:

Gene:
SLC4A8
Ensembl Gene ID:
ENSAPLG00000013942
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020231
265286 - 277681
12396
ENSAPLT00000014615
265286 - 280522
15237