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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_296936_297860_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
296936 - 297860
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTCCAACC
Flanking Amino Acid:
RALGPDSRPPECIDQKFKRC
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61
39.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
64.6
0.33
0.7
61.4
21.6
Minor 5ss
33
-1.9
3.3
39.7
39.8
Minor BPS
56.7
0.19
1.8
74.85
35.6

Associated Gene:

Gene:
GALNT6
Ensembl Gene ID:
ENSAPLG00000013611
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014201
296541 - 304612
8072