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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_301341_301445_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
301341 - 301445
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
CTCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAG
U12 Branch Point Sequence:
GGTGCTGGAGCC
Flanking Amino Acid:
GGENVEMSFRVWQCGGQLEI
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
37
-0.8
1.7
30.7
44
Major PPT
71.8
0.49
0.8
65.4
30.5
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
39.1
-0.8
2.2
48.49
41.4

Associated Gene:

Gene:
GALNT6
Ensembl Gene ID:
ENSAPLG00000013611
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014201
296541 - 304612
8072