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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_301383_306312_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
301383 - 306312
Intron Length:
4930

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCCTTTAT
5'SS Class:
weak_major
3'SS Sequence:
GCCGCTTGGGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGAGCAG
U12 Branch Point Sequence:
GGTCCCGGTCCC
Flanking Amino Acid:
LKHGSGEYPHASPHTMS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.4
51.8
41.7
Major BPS
32.8
-1
1.6
31.2
43.9
Major PPT
44.1
-0.3
1.7
45
41.3
Minor 5ss
28.4
-2.5
4
44.8
43.3
Minor BPS
28.1
-1.7
3.6
46.7
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013234
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036401
301361 - 307957
6597