Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_301647_302104_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

301647 - 302104

Intron Length:

458

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCGTGC

5'SS Class:

major

3'SS Sequence:

ACTTTGTCGATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

GTTAGTTTAATT

Flanking Amino Acid:

NQQAAQMAREKTYGDITERR

Intron Amino Acid Position:

401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.36

1.3

55.9

44.3

Major BPS

81.8

0.79

1.1

34.5

Major PPT

65.7

0.35

61.7

39.5

Minor 5ss

41.6

-0.9

3.4

59.3

45.4

Minor BPS

60.2

0.4

1.8

77.11

39.8

Associated Gene:

Gene:

GALNT6

Ensembl Gene ID:

ENSAPLG00000013611

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014201

296541 - 304612

8072