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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_302237_303056_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
302237 - 303056
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
PDLTPTFYGAIKNEGTKSCL
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1
73.1
43.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87
0.83
0.7
81.7
23.1
Minor 5ss
35.6
-1.6
2.7
43.3
43.7
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
GALNT6
Ensembl Gene ID:
ENSAPLG00000013611
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014201
296541 - 304612
8072