Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_305476_306312_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

305476 - 306312

Intron Length:

837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAAACAA

5'SS Class:

major

3'SS Sequence:

GCCGCTTGGGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGAGCAG

U12 Branch Point Sequence:

GGTCCCGGTCCC

Flanking Amino Acid:

WGVASAAVVLDPHASPHTMS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

61.1

39.5

Major BPS

32.8

-1

1.6

31.2

43.9

Major PPT

44.1

-0.3

1.7

41.3

Minor 5ss

30.2

-2.3

3.1

30.4

42.8

Minor BPS

28.1

-1.7

3.6

46.7

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013234

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046094

305418 - 307957

2540