Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_308757_309810_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

308757 - 309810

Intron Length:

1054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGCCC

5'SS Class:

major

3'SS Sequence:

CTCCCCATCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CTCTCCCCATCG

Flanking Amino Acid:

QKRFSRAQEKVLQKLGKTVE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

63.1

39.8

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

71.5

0.48

0.8

65.3

28.8

Minor 5ss

30.9

-2.2

3.4

42.7

44.4

Minor BPS

44.1

-0.5

2.1

52.09

Associated Gene:

Gene:

BIN2

Ensembl Gene ID:

ENSAPLG00000028612

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018695

308679 - 313547

4869

ENSAPLT00000045768

308679 - 317662

8984