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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_49580_50397_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49580 - 50397
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTCTTTGAAGA
Flanking Amino Acid:
NTQFACFIDKVRFLEQQNKV
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
77.1
0.61
0.9
73.9
36.8
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
53.6
0.11
1.7
69
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017194
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025696
49121 - 54661
5541