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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_50978_51635_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50978 - 51635
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGCATCTCATCT
Flanking Amino Acid:
VENEFVALKKDADCIFLNKE
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.4
0.75
0.8
81
30.8
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
47.9
-0
1.8
65.36
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017194
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025696
49121 - 54661
5541