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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_53313_53636_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53313 - 53636
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TTTTCCCTAACA
Flanking Amino Acid:
YKTLLEGEESRICVGNPVSV
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
82.1
0.72
0.8
78
29.3
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
81.7
0.99
1.5
92.55
26.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017194
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025696
49121 - 54661
5541