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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_763594_764452_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
763594 - 764452
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTCTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGTCATTTATTT
Flanking Amino Acid:
IMYAAVDSRKQEEQPKYEDN
Intron Amino Acid Position:
1426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
86.3
0.82
0.7
80.9
24.2
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
50.9
0.11
1.7
71.14
39.9

Associated Gene:

Gene:
SCN8A
Ensembl Gene ID:
ENSAPLG00000010964
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011507
759934 - 803143
43210
ENSAPLT00000045904
759934 - 810069
50136