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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_768988_773318_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
768988 - 773318
Intron Length:
4331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTATC
5'SS Class:
weak_major
3'SS Sequence:
ATTTTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
WCWLDFLIVAVSLVSLVANA
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
71.2
38.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.9
0.63
0.9
74.2
35.9
Minor 5ss
49.3
-0
2.5
72.8
36.5
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
SCN8A
Ensembl Gene ID:
ENSAPLG00000010964
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045904
759934 - 810069
50136
ENSAPLT00000011507
759934 - 803143
43210