Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_7703_7939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7703 - 7939

Intron Length:

237

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTACTCTCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TATATTTTTACT

Flanking Amino Acid:

MQQYVEDYKTKYEEEINRRT

Intron Amino Acid Position:

283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.9

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

0.54

0.8

69.4

31.1

Minor 5ss

34.7

-1.7

3.2

41.8

38.8

Minor BPS

59.7

0.38

1.6

77.15

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019239

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035123

6338 - 106431

100094

ENSAPLT00000028150

6338 - 10090

3753