Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_775383_775789_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

775383 - 775789

Intron Length:

407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGATGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTTCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TGGTCTTTATTT

Flanking Amino Acid:

SDTDPDGSKEKLDDTSSSEG

Intron Amino Acid Position:

1123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

72.5

39.9

Major BPS

83.9

0.84

73.9

41.3

Major PPT

73.4

0.53

1.1

71.5

43.2

Minor 5ss

38.3

-1.3

3.4

56.2

Minor BPS

63.6

0.5

1.6

76.16

41.2

Associated Gene:

Gene:

SCN8A

Ensembl Gene ID:

ENSAPLG00000010964

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045904

759934 - 810069

50136

ENSAPLT00000011507

759934 - 803143

43210