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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_781100_782449_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
781100 - 782449
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAATA
5'SS Class:
strong_major
3'SS Sequence:
ACGACTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGTATTAATC
Flanking Amino Acid:
SMPGGRLLPEGTTEIEIKKK
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
79.3
28.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.5
0.51
1
65.4
40.3
Minor 5ss
31
-2.2
3.1
39.7
45.8
Minor BPS
63.2
0.39
1.7
74.76
36.2

Associated Gene:

Gene:
SCN8A
Ensembl Gene ID:
ENSAPLG00000010964
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045904
759934 - 810069
50136
ENSAPLT00000011507
759934 - 803143
43210