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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_782810_783197_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
782810 - 783197
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTTTC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTTCTTTTCTT
Flanking Amino Acid:
IGRKFSIMNQSLLSIPGSPF
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
75.1
36
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
84.2
0.77
0.7
77
31.8
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
43.4
-0.4
3.6
74.98
42.6

Associated Gene:

Gene:
SCN8A
Ensembl Gene ID:
ENSAPLG00000010964
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045904
759934 - 810069
50136
ENSAPLT00000011507
759934 - 803143
43210