About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_783486_784060_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
783486 - 784060
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCACCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTTGCCTTCACC
Flanking Amino Acid:
QLKKQQEEAQAAAMVTSAGT
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78
0.63
0.8
74.1
29.8
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
63.7
0.41
1.9
73.88
43.5

Associated Gene:

Gene:
SCN8A
Ensembl Gene ID:
ENSAPLG00000010964
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045904
759934 - 810069
50136
ENSAPLT00000011507
759934 - 803143
43210