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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_785086_785516_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

785086 - 785516

Intron Length:

431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

ATCTTCTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

ATGCCCTGAAAT

Flanking Amino Acid:

PLLCGNSSDAGQCPEGYTCM

Intron Amino Acid Position:

331

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

81.3

32.8

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

85.9

0.81

0.7

80.2

31.2

Minor 5ss

32.7

-2

3.4

40.8

45.4

Minor BPS

0.39

1.6

74.76

41.1

Associated Gene:

Gene:

SCN8A

Ensembl Gene ID:

ENSAPLG00000010964

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045904

759934 - 810069

50136

ENSAPLT00000011507

759934 - 803143

43210