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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_786279_790895_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
786279 - 790895
Intron Length:
4617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTGAT
U12 Branch Point Sequence:
TGATTTCTAGTC
Flanking Amino Acid:
RALKTISVIPGLKTIVGALI
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
55.7
0.14
1.4
49.1
46.3
Major PPT
84.7
0.78
0.7
80.7
24.5
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
46
-0.3
1.8
56.1
36.4

Associated Gene:

Gene:
SCN8A
Ensembl Gene ID:
ENSAPLG00000010964
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011507
759934 - 803143
43210