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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_786279_791124_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

786279 - 791124

Intron Length:

4846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAGTGAT

U12 Branch Point Sequence:

TGATTTCTAGTC

Flanking Amino Acid:

RALKTISVIPGLKTIVGALI

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

64.3

47.1

Major BPS

55.7

0.14

1.4

49.1

46.3

Major PPT

84.7

0.78

0.7

80.7

24.5

Minor 5ss

30.2

-2.3

3.2

38.6

46.5

Minor BPS

-0.3

1.8

56.1

36.4

Associated Gene:

Gene:

SCN8A

Ensembl Gene ID:

ENSAPLG00000010964

Chromosome:

PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045904

759934 - 810069

50136