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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_795426_802813_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
795426 - 802813
Intron Length:
7388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TCTTTCTCTACA
Flanking Amino Acid:
DFDPYYMTQKTFVVLNRGKT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89.2
0.88
0.6
84.1
24.1
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
56.8
0.21
1.9
71.02
41

Associated Gene:

Gene:
SCN8A
Ensembl Gene ID:
ENSAPLG00000010964
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045904
759934 - 810069
50136
ENSAPLT00000011507
759934 - 803143
43210