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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000234.1_80270_134650_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80270 - 134650
Intron Length:
54381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTTCTGGGATT
Flanking Amino Acid:
NNKFASFIDKVRLLEQQNEV
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
69.1
0.43
1.1
65.6
44.6
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
47.4
-0.1
2.1
70.82
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004524
Chromosome:
PEDO01000234.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041651
79637 - 137600
57964